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Functions making R easy for epidemiological calculation.
Datasets from Dbase (.dbf), Stata (.dta), SPSS(.sav), EpiInfo(.rec) and Comma separated value (.csv) formats as well as R data frames can be processed to do make several epidemiological calculations.
The main goal of the Computer Assisted Search for Epidemics (CASE) project is to develop a reliable system that generates warnings when the number of reported cases of a particular infectious disease reaches a level that indicates an unusual or unexpected rate. The system is currently in use at the Swedish Institute for Infectious Disease Control (SMI). It performs daily surveillance using data obtained from the database to which all notifiable diseases are reported in Sweden.
FreeSHIM is an opensource electronic medical device interface, which aims to allow any EMR/PM system to talk to any medical device attached to a workstation without having to install tons of pesky drivers or “reinvent the wheel” for each additional device manufacturer.
It is written in Java, and has been tested on Linux and Windows workstations (though we’re pretty sure it also runs fine on Mac OS X as well), and exposes both SOAP and REST interfaces. Its only prerequisite is a running J2EE container, such as Apache Tomcat.
jlpv is a Java Light PACS Viewer application useful for review series or images from DICOM data retrieved from the DCM4CHEE PACS system. It also uses ImageJ as a rendering engine or viewer. This project is in a early stage.
REMITT is a revolutionary medical information translation and transmission system, which is primarily used for preparing and submitting medical billing data.
REMITT works independent of any specific electronic medical record (EMR) or practice management (PM) system, and can interface with any EMR or PM system which implements its application programming interface (API). The first system to do so has been FreeMED.
Currently Supported Formats
Currently Supported Output Types
A package for analysing epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
UBY DICOM is a cross-platform library for handling DICOM files and network communication in the Ruby language. DICOM is a standard that is widely used throughout the world for saving and transmitting image data used in medicine. The library supports reading, editing and writing files as well as querying, retrieving and sending files.
Kradview is a GPLed viewer of images obtained for some different sources: X-ray, NMR and DICOM-compatible imaging devices that runs on free operating systems. Its aim is a easy to use DICOM viewer with instant rendering of images, no matter the size and the zoom of the DICOM image. It covers the "let's see the the X-ray image" need of the medical professional.
BioImageXD is a free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
BioImageXD is a collaborative open source free software project, designed and developed by microscopists, cell biologists and programmers from the Universities of Jyväskylä and Turku in Finland, Max Planck Institute CBG, Dresden, Germany and collaborators worldwide.
Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.
It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.
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