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Gwyddion

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Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.

It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.

Simulation Open Framework Architecture (SOFA)

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Your rating: None Average: 4.2 (6 votes)

SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool.

XMedCon

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The project stands for Medical Image Conversion. Released under the (L)GPL licence, it comes with the full C-source code of the library, a flexible command-line utility and a neat graphical front-end using the Gtk+ toolkit. The supported formats are: Acr/Nema 2.0, Analyze (SPM), Concorde/µPET, DICOM 3.0, CTI ECAT 6/7, NIfTI-1, InterFile3.3 and PNG or Gif87a/89a.

The 'medAdherence' R Package

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Your rating: None Average: 2 (2 votes)

Adherence is defined as "the extent to which a person’s behavior coincides with medical or health
advice", which is very important, for both clinical researchers and physicians, to identify the treatment
effect of a specific medication(s).

OpenIGTLink

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Your rating: None Average: 4 (4 votes)

The goal of OpenIGTLink is to provide a standardized mechanism to connect software/hardware through the network for image-guided therapy (IGT) applications. The features of OpenIGTLink include:

MeVisLab

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MeVisLab represents a platform for image processing research and development with a focus on medical imaging. It allows fast integration and testing of new algorithms and the development of application prototypes that can be used in clinical environments.

SIVIC

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Your rating: None Average: 3.6 (5 votes)

Spectroscopic Image Visualization and Computing (SIVIC) is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.

Bioconductor

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Bioconductor is an open source, open development software project to provide tools for the analysis and comprehension of high-throughput genomic data. It is based primarily on the R programming language.

The Bioconductor release version is updated twice each year, and is appropriate for most users. There is also a development version, to which new features and packages are added prior to incorporation in the release. A large number of meta-data packages provide pathway, organism, microarray and other annotations.

FSL

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Your rating: None Average: 2.4 (8 votes)

FMRIB Software Library (FSL) is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

Cottage Med

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CottageMed is a FileMaker Pro application that is flexible, ruggedly dependable and HIPAA-secure Electronic Medical Records system (EMR) with secure and wireless networking, PDA and multiple-office support, prescription writing and cross-platform."

Based on Filemaker Pro.

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