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The R Project for Statistical Computing

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R is a language and environment for statistical computing and graphics. It is a GNU project which is similar to the S language and environment which was developed at Bell Laboratories (formerly AT&T, now Lucent Technologies) by John Chambers and colleagues. R can be considered as a different implementation of S. There are some important differences, but much code written for S runs unaltered under R."

Homepage: 
http://www.r-project.org/

FieldTrip

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FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

Homepage: 
http://fieldtrip.fcdonders.nl/

The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

Homepage: 
http://www.medepi.com/?q=epitools

CTSim

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Your rating: None Average: 2.3 (7 votes)

CTSim simulates the process of transmitting X-rays through phantom objects. These X-ray data are called projections. CTSim reconstructs the original phantom image from the projections using a variety of algorithms. Additionally, CTSim has a wide array of image analysis and image processing functions.

Homepage: 
http://www.ctsim.org/

OpenViBE

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OpenViBE is a software platform dedicated to designing, testing and using brain-computer interfaces.

OpenViBE is a software for real-time neurosciences (that is, for real-time processing of brain signals). It can be used to acquire, filter, process, classify and visualize brain signals in real time.

The main OpenViBE application fields are medical (assistance to disabled people, real-time biofeedback, neurofeedback, real-time diagnosis), multimedia (virtual reality, video games), robotics and all other application fields related to brain-computer interfaces and real-time neurosciences.

Homepage: 
http://openvibe.inria.fr/

OpenIGTLink

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The goal of OpenIGTLink is to provide a standardized mechanism to connect software/hardware through the network for image-guided therapy (IGT) applications. The features of OpenIGTLink include:

Homepage: 
http://www.na-mic.org/Wiki/index.php/OpenIGTLink

MassChroQ

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MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from mass-spectrometry techniques. It is particularly well suited for peptide quantification of LC-MS (Liquid Chromatography - Mass Spectrometry) data. It performs chromatographic alignment, XIC extraction, peak detection and quantification on identified peptides, with or without isotopic labeling, on high or low resolution data and it takes into account peptide or protein fractionation.

Homepage: 
http://pappso.inra.fr/bioinfo/masschroq/

SCIRun

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SCIRun is a problem solving environment or "computational workbench" in which a user selects software modules that can be connected in a visual programing environment to create a high level workflow for experimentation. Each module exposes all the available parameters necessary for scientists to adjust the outcome of their simulation or visualization. The networks in SCIRun are flexible enough to enable duplication of networks and creation of new modules.

Homepage: 
http://www.sci.utah.edu/cibc-software/scirun.html

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