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Ogles2 is an interactive slice and volume visualization and analysis tool based on Open Inventor / Coin3D. Ogles2 allows for reproducing the workflow of frame based stereotactic neurosurgery. In the long run it strives for being an open source stereotactic planning and analysis system. Ogles2 is NOT APPROVED FOR CLINICAL USE.
ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaView's batch processing capabilities.
ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.
MassChroQ (Mass Chromatogram Quantification) software performs quantification of data obtained from mass-spectrometry techniques. It is particularly well suited for peptide quantification of LC-MS (Liquid Chromatography - Mass Spectrometry) data. It performs chromatographic alignment, XIC extraction, peak detection and quantification on identified peptides, with or without isotopic labeling, on high or low resolution data and it takes into account peptide or protein fractionation.
Voreen is an open source rapid application development framework for the interactive visualization and analysis of multi-modal volumetric data sets. It provides GPU-based volume rendering and data analysis techniques and offers high flexibility when developing new analysis workflows in collaboration with domain experts. The Voreen framework consists of a multi-platform C++ library, which can be easily integrated into existing applications, and a Qt-based stand-alone application.
Vurtigo is a four-dimensional (3D + time) real-time visualization software for guiding cardiovascular interventions. It is designed to be part of a pipeline that can connect it to a magnetic resonance imaging (MRI) scanner, actively tracked catheters, and navigational devices.
Written in C++ under the GNU Lesser General Public License v2.1, Vurtigo features a plug-in based architecture, allowing developers to extend the software using an interface to manipulate objects within Vurtigo. The software runs on Win32, Linux and Mac OS X.
FreeDiams prescriber is the result of FreeMedForms prescriber plugins built into a standalone application. FreeDiams is a multi-platform (MacOS, Linux, FreeBSD, Windows), free and open source.
It is developed by medical doctors and is intended for use by these same professionals. It can be used alone to prescribe and / or test drug interactions within a prescription. It can be linked to any application thanks to its command line parameters. Available drugs databases : USA (FDA), Canadian (HCDPD), French (AFSSAPS), South African (SAEPI).
FreeMedForms is a multi-user, Open EMR (electronic medical record) manager. It is free and open source.
The main objective of FreeMedForms is to create a highly dynamic EMR manager where patient files are defined by a set of XML scripted files. Interoperability and internationalization are main objectives too.
FreeMedForms is intended to be used:
- in general medical practice (unique doctor office, groups),
- in clinics and hospitals,
- in clinical research groups.
The application can be easily improved thanks to the intensive usage of plugins. The code is available on a public SVN and is documented in english only.
Epigrass is a open-source simulation platform created to study epidemics and their spatial (geographic) dinamics.
Epigrass was developed as a scientific project, by the founders of Metamodellers at the Oswaldo Cruz Foundation. Currently, Metamodellers is the main maintainer of the code, ensuring its continuous improvement while remaining a completely free tool.
ITK-SNAP is a software application used to segment structures in 3D medical images. It is the product of a decade-long collaboration between Paul Yushkevich, Ph.D., of the Penn Image Computing and Science Laboratory (PICSL)