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JULIDE

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JULIDE is a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections.

PyEEG

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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

Oviyam

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Oviyam is a web based DICOM Viewer. Using standard DICOM protocols patient lists can be queried, particular series or studies retrieved and be displayed as JPEG images in your browser. Oviyam will work with any DICOM server that supports WADO (Web Access to DICOM Persistent Objects).

Oviyam is a free download and is pre-packaged for deployment with JBoss.
The source is triple licensed under MPL 1.1/GPL 2.0/LGPL 2.1.

Oviyam is built using the dcm4che toolkit and script.aculo.us framework.

OpenGPSoC

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The openGPSoC project came to life in September 2012 after a conversation at NHS Hack Day ’2′ in Liverpool. The idea of a fully open source GP clinical system has been suggested and discussed many times in the past, however due to the stringent requirements of any such software it is recognised as a very hard thing to try to achieve. While we recognised this difficulty, we also felt there were a number of opportunities at present which might make such a project possible.

The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

openMEDIS

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OpenMEDIS is a simple, flexible, and standardized tool to collect (inventory) and process (manage) information on health technology infrastructure, e.g. medical devices in low- and middle income countries.

Mergence

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"Mergence is a high performance, open source HL7integration engine and application platform. It was developed to fill the need for an open source, fully transactional healthcare integration system capable of handling millions of messages per day, and thousands of concurrent LLP connections. Mergence is based on Apache ServiceMix, a lightweight enterprise service bus which conforms to the JBI standard, and HAPI, an excellent opensource HL7v2 API. We plan to support HL7v3 in the next release."

The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

ImmunoRatio

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ImmunoRatio is a free web application for automated image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67 immunostained tissue sections.

The application:

  1. segments diaminobenzidine-stained (DAB) and hematoxylin-stained nuclei regions from the user-submitted image,
  2. calculates the percentage of DAB-stained nuclear area over total nuclear area (=labeling index), and
  3. generates a pseudo-colored result image matching the area segmentation (see the example on right side).

CommCare

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An application to strengthen and monitor community health programs that runs on low cost mobile phones.

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