ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.4 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux.
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ImmunoRatio is a free web application for automated image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67 immunostained tissue sections.
- segments diaminobenzidine-stained (DAB) and hematoxylin-stained nuclei regions from the user-submitted image,
- calculates the percentage of DAB-stained nuclear area over total nuclear area (=labeling index), and
- generates a pseudo-colored result image matching the area segmentation (see the example on right side).
This project holds an implementation of the Cross-Enterprise Document Sharing (XDS) profile as defined by IHE (ihe.net). It includes implementations of both the Document Registry and Document Repository actors.
The project is deployed at the XDS Public Registry Test Facility of the National Institute of Standards and Technology (NIST).
Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.
Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.
Full featured DICOM server based on and heavily extending the public domain UCDMC DICOM code developed by Mark Oskin.
openFDA is a research project to provide open APIs, raw data downloads, documentation and examples, and a developer community for an important collection of FDA public datasets.
RPMS is an integrated solution for the management of clinical, business practice and administrative information in healthcare facilities of various sizes. Flexible hardware configurations, over 50 software applications, and appropriate network communication components combine to provide a comprehensive clinical, financial, and administrative solution. This solution is in use at most health care facilities within the Indian health care delivery system.
The Observational Health Data Sciences and Informatics (or OHDSI, pronounced "Odyssey") program is a multi-stakeholder, interdisciplinary collaborative to bring out the value of health data through large-scale analytics. All our solutions are open-source.
OHDSI has established an international network of researchers and observational health databases with a central coordinating center housed at Columbia University.
Spark is a public domain FHIR server developed in C#, initially built by Firely and as of recently being maintained by Kufu.
Spark implements a major part of the FHIR specification and has been used and tested during several HL7 WGM Connectathons.