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Niftilib

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Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.

Indivo

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Indivo is the original personally controlled health record (PCHR) system. A PCHR enables an individual to own and manage a complete, secure, digital copy of her health and wellness information. Indivo integrates health information across sites of care and over time. Indivo is free and open-source, uses open, unencumbered standards, and is actively deployed in diverse settings, in particular our own Children's Hospital Boston and the Dossia Consortium.

Perl HL7 Toolkit

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This project provides a simple but flexible Perl Toolkit for using the HL7 protocol. The toolkit consists of a Perl API, an implementation of a pluggable forking HL7 server, and an HL7 message queue daemon for developing HL7 capable applications in Perl.

GT.M

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GT.M is a FOSS (AGPL v3) implementation of M (also known as MUMPS), a combination of a procedural programming language well integrated with a hierarchical key-value database engine. M is widely used in enterprise scale healthcare applications and application suites, such as the VistA implementations. GT.M scales up to very large databases (the largest production sites have aggregate databases to several TB) and thousands of concurrent users.

Gwyddion

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Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.

It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.

ViMeT

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Virtual Medical Training (ViMeT) is an object-oriented framework that uses virtual reality to simulate medical training.

HAPI

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HAPI (HL7 application programming interface; pronounced "happy") is an open-source, object-oriented HL7 2.x parser and encoder for HL7 version 2.x messages written in Java. This project is not affiliated with the HL7 organization; we are just writing some software that conforms to their specification. The project was initiated by University Health Network (a large multi-site teaching hospital in Toronto, Canada).