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The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."


Your rating: None Average: 3.5 (35 votes)

ClearCanvas Workstation is our friendly, integrated RIS Client and DICOM PACS viewer. Because it is built on top of our highly extensible application framework, we expect that it will be appropriate not just for radiologists and clinicians, but also researchers who want to build new, cutting edge tools that can be easily "tried out" in a clinical environment. Like our other creations, ClearCanvas Worksation is free and open source.

Feature Highlights

  • Very easy to use, intuitive interface
  • Integration with ClearCanvas RIS


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"DataServer is an open source XML gateway, specially tailored for the medical domain. DataServer is middleware, situated between clients and traditional Health Information Systems (HIS), Radiology Information Systems (RIS) and Picture Archive and Communication Systems (PACS). It supports relational (SQL), SOAP, and HTTP data sources out of the box, but is highly extensible for custom types."


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"PyMVPA is a Python module intended to ease pattern classification analyses of large datasets. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. PyMVPA provides high-level abstraction of typical processing steps and a number of implementations of some popular algorithms. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is truly free software (in every respect) and additionally requires nothing but free-software to run."

Medical Exploration Toolkit (METK)

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The MedicalExplorationToolkit (METK) was designed for loading, visualizing and exploring segmented medical data sets. It is a framework of several modules in MeVisLab, a development environment for medical image processing and visualization.

  • Case Management: Load and save whole cases of segmented structures e.g. for surgery planning, educational training or intra operative visualization.
  • Basic Visualization in 2D and 3D: Visualize segmented structures in multiple manner e.g. iso surface rendering, stippling, hatching, silhouettes, volume rendering, 2d overlays.

The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

C# ECG Toolkit

Your rating: None Average: 2.6 (16 votes)

C# ECG Toolkit is an open source software toolkit to convert, view and print electrocardiograms. The toolkit is developed using C# .NET 1.1 & 2.0. Support for ECG formats: SCP-ECG, DICOM and HL7 aECG.


Your rating: None Average: 5 (2 votes)

The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.


  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

The 'surveillance' R Package

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The R-package ’surveillance’ is a framework for the development and the evaluation of outbreak detection algorithms in univariate and multivariate routine collected public health surveillance data. Hence, potential users are biostatisticians, epidemiologists and others working in applied infectious disease epidemiology. However, applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.


Your rating: None Average: 4.7 (3 votes)

ezDICOM is a medical viewer for MRI, CT and ultrasound images. It can read images from Analyze, DICOM, GE Genesis, Interfile, Siemens Magnetom, Siemens Somatom and NEMA formats. It also includes tools for converting medical images from proprietary format.