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Visualization Toolkit (VTK)

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The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing, and visualization. It consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including scalar, vector, tensor, texture, and volumetric methods, as well as advanced modeling techniques such as implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

The Spatiotemporal Epidemiological Modeler (STEM) Project

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The Spatiotemporal Epidemiological Modeler (STEM) tool is designed to help scientists and public health officials create and use spatial and temporal models of emerging infectious diseases. These models can aid in understanding and potentially preventing the spread of such diseases.

i2b2

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i2b2 (Informatics for Integrating Biology and the Bedside) is an NIH-funded National Center for Biomedical Computing based at Partners HealthCare System. The i2b2 Center is developing a scalable informatics framework that will enable clinical researchers to use existing clinical data for discovery research and, when combined with IRB-approved genomic data, facilitate the design of targeted therapies for individual patients with diseases having genetic origins. This platform currently enjoys wide international adoption by the CTSA network, academic health centers, and industry.

Mirth

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Mirth is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports. It is divided in three subprojects:

  • Mirth Connect: Specifically designed for HL7 message integration, Mirth Connect provides the necessary tools for developing, testing, deploying, and monitoring interfaces.

EtherCIS

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Clinical Data Repository
Healthcare is Information Intensive - Data: Information: Knowledge
21st Century Healthcare is under pressure, around the globe.
We need to work smarter not harder – to survive, yet alone thrive.
Currently Health IT is holding healthcare back.
We must raise our game in this information intensive field

Facility Reconciliation Tool

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The Facility Reconciliation Tool is an open source and open standards-based product used to compare lists of facilities from different data sources. The tools supports uploading CSV, and connecting to FHIR servers and DHIS2.

The tool can be used as a standalone application with its own authentication or as an easily installable DHIS2 app that uses DHIS2 for authentication that runs the tool in the background.

OpenEEG

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The OpenEEG project is about creating a low cost EEG device. Working hardware has been built and is in a late beta stage. Software is still only alpha.

Many people are interested in what is called neurofeedback or EEG biofeedback training, a generic mental training method which makes the trainee consciously aware of the general activity in the brain. This method shows great potential for improving many mental capabilities and exploring consciousness. Other people want to do experiments with brain-computer interfaces or just want to have a look at their brain at work.

openDICOM.NET

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openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.

Lipsia

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Leipzig Image Processing and Statistical Inference Algorithms (Lipsia) is a software tool for processing functional magnetic resonance imaging (fMRI) data. It was developed over the course of several years at the Max-Planck-Institute for Human Cognitive and Brain Sciences in Leipzig, Germany.

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