Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly. GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.
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Mirth is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports. It is divided in three subprojects:
- Mirth Connect: Specifically designed for HL7 message integration, Mirth Connect provides the necessary tools for developing, testing, deploying, and monitoring interfaces.
CONNECT is an open source software solution that supports health information exchange – both locally and at the national level. CONNECT uses Nationwide Health Information Network (NHIN) standards and governance to make sure that health information exchanges are compatible with other exchanges being set up throughout the country.
Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.
Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.
REMITT is a revolutionary medical information translation and transmission system, which is primarily used for preparing and submitting medical billing data.
REMITT works independent of any specific electronic medical record (EMR) or practice management (PM) system, and can interface with any EMR or PM system which implements its application programming interface (API). The first system to do so has been FreeMED.
Currently Supported Formats
- ANSI NSF X12 837 Professional
Currently Supported Output Types
XML Validation Framework and Canonical XML dictionary-based exchange assembly - OASIS CAM
The OASIS CAM toolkit provides a suite of tools for XML Validation and XML Exchange design and assembly from canonical XML dictionary components.
Included in the toolkit is an XML Editor/Validation/Schema Designer along with the CAMV runtime XML validation engine.
The project implements the OASIS CAM standard & NIEM IEPD approach. The visual editor allows design of exchange structures using XML components dictionaries.
openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.
BioSig is an open source software library for biomedical signal processing, featuring for example the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Major application areas are: Neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems and sleep research. The aim of the BioSig project is to foster research in biomedical signal processing by providing open source software tools for many different applications.
- Axial 360 is an interface engine and connector library that enables health care systems of all types - hospital systems, lab systems, EHRs, HIEs, etc - to share clinical data when it is needed.
- Axial 360 is built using best-of-bread open source components that enable improved scalability, extensibility, and modularity relative to other interface engines.
- Axial 360 will feature a library of free “connectors” developed by the open source community, that will reduce the time required to interface with applications.
ATOM is an OMERO client which allows automated import of image data into OMERO.