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Niftilib

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Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.

REMITT

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REMITT is a revolutionary medical information translation and transmission system, which is primarily used for preparing and submitting medical billing data.

REMITT works independent of any specific electronic medical record (EMR) or practice management (PM) system, and can interface with any EMR or PM system which implements its application programming interface (API). The first system to do so has been FreeMED.

Currently Supported Formats

  • HCFA-1500/CRM-1500
  • ANSI NSF X12 837 Professional

Currently Supported Output Types

JCAM Engine

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XML Validation Framework and Canonical XML dictionary-based exchange assembly - OASIS CAM

The OASIS CAM toolkit provides a suite of tools for XML Validation and XML Exchange design and assembly from canonical XML dictionary components.

Included in the toolkit is an XML Editor/Validation/Schema Designer along with the CAMV runtime XML validation engine.

The project implements the OASIS CAM standard & NIEM IEPD approach. The visual editor allows design of exchange structures using XML components dictionaries.

BioSig

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BioSig is an open source software library for biomedical signal processing, featuring for example the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Major application areas are: Neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems and sleep research. The aim of the BioSig project is to foster research in biomedical signal processing by providing open source software tools for many different applications.

Axial 360

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  • Axial 360 is an interface engine and connector library that enables health care systems of all types - hospital systems, lab systems, EHRs, HIEs, etc - to share clinical data when it is needed.
  • Axial 360 is built using best-of-bread open source components that enable improved scalability, extensibility, and modularity relative to other interface engines.
  • Axial 360 will feature a library of free “connectors” developed by the open source community, that will reduce the time required to interface with applications.

Utilities For Patient Data Exchange (UPDE)

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Utilities for Patient Data Exchange. A parser for text files to use with some of the utilities provided by the DCMTK from Offis. The purpose is to provide a basic DICOM Modality Worklist Management SCP.

Project HealthDesign Common Platform

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The Project HealthDesign Common Platform is a set of software components that provide common, shared functions to a variety of personal health applications (PHAs). The goal of “centralizing” these functions is to reduce personal health application implementation time and increase interoperability among the PHAs. The common platform components are currently implemented as web services that PHAs may access via standard web interfaces. Services exist for storing observations and medications, as well as for providing authentication, registry, and access-control functions.

ImageJ

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ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.4 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux.

GNU Octave

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GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with Matlab. It may also be used as a batch-oriented language.

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