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BioImageXD

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BioImageXD is a free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.

BioImageXD is a collaborative open source free software project, designed and developed by microscopists, cell biologists and programmers from the Universities of Jyväskylä and Turku in Finland, Max Planck Institute CBG, Dresden, Germany and collaborators worldwide.

MITK 3M3

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MITK 3M3 is a free and user-friendly application which ensures effective and efficient work, analysis, and visualization of radiological image data.

MITK 3M3 gives you access to the latest algorithms and methods from research. The cooperation between the German Cancer Research Center (DKFZ) and mint medical allows for a rapid transfer of leading-edge research topics, including diffusion imaging and automated segmentation techniques. MITK 3M3 will be constantly extended with the addition of new software modules to bring the latest research work to your computer.

DataViewer3D (DV3D)

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DataViewer3D (DV3D) is a multi-modal imaging data visualization tool offering a cross-platform, open-source solution to simultaneous data overlay visualization requirements of imaging studies.

Medical Imaging Interaction Toolkit (MITK)

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The Medical Imaging Interaction Toolkit (MITK) is a free open-source software system for development of interactive medical image processing software. MITK combines the Insight Toolkit (ITK) and the Visualization Toolkit (VTK) with an application framework. As a toolkit, MITK offers those features that are relevant for the development of interactive medical imaging software covered neither by ITK nor VTK.

Core features of the MITK platform:

    Medical Exploration Toolkit (METK)

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    Your rating: None Average: 1.7 (3 votes)

    The MedicalExplorationToolkit (METK) was designed for loading, visualizing and exploring segmented medical data sets. It is a framework of several modules in MeVisLab, a development environment for medical image processing and visualization.

    • Case Management: Load and save whole cases of segmented structures e.g. for surgery planning, educational training or intra operative visualization.
    • Basic Visualization in 2D and 3D: Visualize segmented structures in multiple manner e.g. iso surface rendering, stippling, hatching, silhouettes, volume rendering, 2d overlays.

    Nukak3D

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    Your rating: None Average: 1.4 (7 votes)

    3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting, DICOM support.

    ImmunoRatio

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    Your rating: None Average: 3.3 (12 votes)

    ImmunoRatio is a free web application for automated image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67 immunostained tissue sections.

    The application:

    1. segments diaminobenzidine-stained (DAB) and hematoxylin-stained nuclei regions from the user-submitted image,
    2. calculates the percentage of DAB-stained nuclear area over total nuclear area (=labeling index), and
    3. generates a pseudo-colored result image matching the area segmentation (see the example on right side).

    MRmap

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    Your rating: None Average: 3.2 (14 votes)

    MRmap is a flexible software tool that enables T1, T2, and T2* mapping from source images of multiple types of pulse sequences (IR-prepared multi-image T1 mapping, Look-Locker/ TOMROP T1 mapping, MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).

    MRmap is a pure research tool and is not intended for any diagnostic or clinical use.

    ImageJ

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    Your rating: None Average: 3.6 (9 votes)

    ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.4 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux.

    Vurtigo

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    Your rating: None Average: 3 (2 votes)

    Vurtigo is a four-dimensional (3D + time) real-time visualization software for guiding cardiovascular interventions. It is designed to be part of a pipeline that can connect it to a magnetic resonance imaging (MRI) scanner, actively tracked catheters, and navigational devices.

    Written in C++ under the GNU Lesser General Public License v2.1, Vurtigo features a plug-in based architecture, allowing developers to extend the software using an interface to manipulate objects within Vurtigo. The software runs on Win32, Linux and Mac OS X.

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