Caret is a free, open-source, software package for structural and functional analyses of the cerebral and cerebellar cortex.
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CTSim simulates the process of transmitting X-rays through phantom objects. These X-ray data are called projections. CTSim reconstructs the original phantom image from the projections using a variety of algorithms. Additionally, CTSim has a wide array of image analysis and image processing functions.
InVesalius is a free medical software used to reconstruct structures of the human body. Based on two-dimensional images, acquired using Computed tomography or Magnetic resonance imaging equipments, the software generates virtual three-dimensional models correspondent to anatomical parts of the human body. After reconstructing three-dimensionally DICOM images, the software allows the generation of STL (stereolithography) files. These files can be used for Rapid Prototyping.
BioImageXD is a free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
BioImageXD is a collaborative open source free software project, designed and developed by microscopists, cell biologists and programmers from the Universities of Jyväskylä and Turku in Finland, Max Planck Institute CBG, Dresden, Germany and collaborators worldwide.
The MedicalExplorationToolkit (METK) was designed for loading, visualizing and exploring segmented medical data sets. It is a framework of several modules in MeVisLab, a development environment for medical image processing and visualization.
- Case Management: Load and save whole cases of segmented structures e.g. for surgery planning, educational training or intra operative visualization.
- Basic Visualization in 2D and 3D: Visualize segmented structures in multiple manner e.g. iso surface rendering, stippling, hatching, silhouettes, volume rendering, 2d overlays.
To lower the barrier to integration and expedite health care interoperability, Open Health Tools provides client side implementations of several key IHE profiles. These implementations were used successfully by over 35 systems to date at the 2007-2010 Connectathons in North America and Europe.
The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.
- Automatic visualiztion with Cytoscape.
- Automatic generation of rule based models for BioNetGen.
- Storage of biological facts that can be used for modelling.
PyEPL (the Python Experiment-Programming Library) is a library for coding psychology experiments in Python. It supports presentation of both visual and auditory stimuli, and supports both manual (keyboard/joystick) and sound (microphone) input as responses.
SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool.
"ODIN is a C++ software framework to develop, simulate and run magnetic resonance sequences on different platforms."