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rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

Epigrass

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Epigrass is a open-source simulation platform created to study epidemics and their spatial (geographic) dinamics.

Epigrass was developed as a scientific project, by the founders of Metamodellers at the Oswaldo Cruz Foundation. Currently, Metamodellers is the main maintainer of the code, ensuring its continuous improvement while remaining a completely free tool.

dicompyler

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Your rating: None Average: 3.6 (8 votes)

dicompyler is an extensible, fully open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform viewer for DICOM and DICOM RT objects. dicompyler is written in Python and is built on pydicom, wxPython, PIL, and matplotlib and runs on Windows, Mac OS X and Linux.

PsychoPy

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PsychoPy is an open-source application to allow the presentation of stimuli and collection of data for a wide range of neuroscience, psychology and psychophysics experiments. It’s a free, powerful alternative to Presentation™ or e-Prime™ . It’s written in Python (a free alternative to Matlab™ ) and combines the graphical strengths of OpenGL with the easy Python syntax to give psychophysics a free and simple stimulus presentation and control package.

MeVisLab

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MeVisLab represents a platform for image processing research and development with a focus on medical imaging. It allows fast integration and testing of new algorithms and the development of application prototypes that can be used in clinical environments.

Cytomine

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The CYTOMINE project (started in 2010) is continuously developing a rich internet application using modern web technologies, databases, and machine learning to foster active and distributed collaboration and ease large-scale image exploitation. Our software is e.g. being used by life scientists to help them better evaluate drug treatments or understand biological processes directly from whole-slide tissue images, by pathologists to share and ease their diagnosis, and by teachers and students for pathology training purposes.

OPAL

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OPAL Is a full stack web framework for building health care applications.

OPAL encourages rapid development, and elegant, pragmatic design.

Focussed on health care, it builds on years of research and design to
help you in building your app. It's free and open source.

openMolar

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Your rating: None Average: 2.1 (7 votes)

A Dental Practice Management Suite developed and used by a successful mixed NHS/private Scottish Dental Practice. Appointments, patient records, treatment planning, billing etc.

Sahana

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Sahana is a Free and Open Source Disaster Management system. It is a web based collaboration tool that addresses the common coordination problems during a disaster from finding missing people, managing aid, managing volunteers, tracking camps effectively between Government groups, the civil society (NGOs) and the victims themselves.

Sahana has 2 different flavours: Eden and Agasti.

Clinica

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Your rating: None Average: 3.5 (4 votes)

Simple medical records manager for the desktop to mantain medical records.
It is thought to be easy to use and it's mainly addressed to a single doctor.

It features:

  • Patient management
  • Doctor management (with associated patients)
  • Visit creation/editing
  • Medicine search online (via plugins)
  • Calendar for events and visits
  • Extensibility via plugins

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