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"Real-time Outbreak and Disease Surveillance (RODS) is open-source public health surveillance software. RODS collects and analyzes disease surveillance data in real time and has been in development since 1999 by the RODS Laboratory. In 2002, the Utah Department of Health used the software for monitoring during the Winter Olympics Games. At present, health departments and other groups in the United States, Canada and Taiwan use the software."
Zyxware Health Monitoring System is a web based disease monitoring for monitoring diseases like chikungunya, malaria - reported by hospitals in a district, county, state or country. There is a reporting & analysis module and a GIS module which displays the data using google maps.
GNU Gluco Control (ggc) helps you to manage your diabetes. It helps managing user's daily data, food data. Has graphs, statistics, printing, meters support and pump support (work in progress).
iPath is providing a free and open platform for "case based collaboration", especially designed for medical applications (telemedicine, etc). The iPath-Server package provides a sort of medical BBS to discuss/consult cases online. Additional modules are available.