You are here

Project Wizard

You can use the category filters given on the right sidebar to narrow down your search results.

Medical Imaging Interaction Toolkit (MITK)

Rating: 
Your rating: None Average: 4.8 (12 votes)

The Medical Imaging Interaction Toolkit (MITK) is a free open-source software system for development of interactive medical image processing software. MITK combines the Insight Toolkit (ITK) and the Visualization Toolkit (VTK) with an application framework. As a toolkit, MITK offers those features that are relevant for the development of interactive medical imaging software covered neither by ITK nor VTK.

Core features of the MITK platform:

PyEEG

Rating: 
Your rating: None Average: 2 (4 votes)

A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

WEKA

Rating: 
Your rating: None Average: 2.7 (3 votes)

Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.

rxncon

Rating: 
Your rating: None Average: 5 (2 votes)

The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

GIMIAS

Rating: 
Your rating: None Average: 2.4 (8 votes)

GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.

GIMIAS suites are collections of prototypes that build a complete platform for one or more clinical applications.

ParaView

Rating: 
Your rating: None Average: 4 (1 vote)

ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaView's batch processing capabilities.

ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.

The Spatiotemporal Epidemiological Modeler (STEM) Project

Rating: 
Your rating: None Average: 5 (1 vote)

The Spatiotemporal Epidemiological Modeler (STEM) tool is designed to help scientists and public health officials create and use spatial and temporal models of emerging infectious diseases. These models can aid in understanding and potentially preventing the spread of such diseases.

OnkoDICOM

Rating: 
Your rating: None Average: 3.5 (2 votes)

OnkoDICOM was created with Radiation Oncologists to allow Radiation Oncologists to do research on DICOM standard image sets (DICOM-RT, CT, MRI, PET) using open source technologies, such as pydicom, dicompyler-core, PySide6, PIL, and matplotlib. OnkoDICOM is cross platform, open source software, and welcomes contributions from the wider community via GitHub .