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rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.
Homepage: 
http://www.rxncon.org/

PsychoPy

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PsychoPy is an open-source application to allow the presentation of stimuli and collection of data for a wide range of neuroscience, psychology and psychophysics experiments. It’s a free, powerful alternative to Presentation™ or e-Prime™ . It’s written in Python (a free alternative to Matlab™ ) and combines the graphical strengths of OpenGL with the easy Python syntax to give psychophysics a free and simple stimulus presentation and control package.

Homepage: 
http://www.psychopy.org/

ViMeT

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Your rating: None Average: 3 (7 votes)

Virtual Medical Training (ViMeT) is an object-oriented framework that uses virtual reality to simulate medical training.

Homepage: 
http://www.each.usp.br/lapis/ViMeT.htm

CyberUnits

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CyberUnits is a cross-platform class library for rapid programming of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal, S and Matlab.

Homepage: 
http://cyberunits.sf.net

InVesalius

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InVesalius is a free medical software used to reconstruct structures of the human body. Based on two-dimensional images, acquired using Computed tomography or Magnetic resonance imaging equipments, the software generates virtual three-dimensional models correspondent to anatomical parts of the human body. After reconstructing three-dimensionally DICOM images, the software allows the generation of STL (stereolithography) files. These files can be used for Rapid Prototyping.

Homepage: 
https://invesalius.github.io/
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