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CASE

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The main goal of the Computer Assisted Search for Epidemics (CASE) project is to develop a reliable system that generates warnings when the number of reported cases of a particular infectious disease reaches a level that indicates an unusual or unexpected rate. The system is currently in use at the Swedish Institute for Infectious Disease Control (SMI). It performs daily surveillance using data obtained from the database to which all notifiable diseases are reported in Sweden.

EGADSS

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EGADSS (Evidence-based Guideline and Decision Support System) is an open source tool that is designed to work in conjunction with primary care Electronic Medical Record (EMR) systems to provide patient specific point of care reminders in order to aid physicians provide high quality care. EGADSS is designed as a stand alone system that would respond to requests from existing Electronic Medical Records such as Wolf, Med Access, and MedOffIS to provide patient specific clinical guidance based on its internal collection of guidelines.

OBsched

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Occupancy in certain hospital patient care units is impacted by procedure scheduling policies and practices. For example, intensive care unit occupancy is strongly related to open heart surgery schedules. Similarly, occupancy in obstetrical postpartum units is impacted by the daily number of scheduled labor inductions and cesarean sections. That was the motivation for this project.

OBsched is a set of optimization models and supporting software for exploring the relationship between patient scheduling and nursing unit occupancy in hospitals.

PyEEG

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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

WEKA

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Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.

rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

ADDIS

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ADDIS is a software developed within the Dutch Escher-project for managing and analyzing clinical trial information.

ADDIS is a proof-of-concept system that allows us to simultaneously discover the possibilities of and the requirements on a database of structured clinical trials data. The automated discovery and (meta-)analysis of trial data, as well as benefit-risk assessment is supported.

ADDIS comes with two built-in examples:

Laika

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Laika analyzes and reports on the interoperability capabilities of EHR systems. This includes the testing for certification of EHR software products and networks.

To support EHR data interoperability testing, Laika is designed to verify the input and output of EHR data against the standards and criteria identified by the Certification Commission for Health Information Technology (CCHIT). Laika is used by the Certification Commission to perform part of the interoperability certification inspection of EHRs.

PyMVPA

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"PyMVPA is a Python module intended to ease pattern classification analyses of large datasets. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. PyMVPA provides high-level abstraction of typical processing steps and a number of implementations of some popular algorithms. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is truly free software (in every respect) and additionally requires nothing but free-software to run."

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