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ImmunoRatio

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Your rating: None Average: 3.3 (12 votes)

ImmunoRatio is a free web application for automated image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67 immunostained tissue sections.

The application:

  1. segments diaminobenzidine-stained (DAB) and hematoxylin-stained nuclei regions from the user-submitted image,
  2. calculates the percentage of DAB-stained nuclear area over total nuclear area (=labeling index), and
  3. generates a pseudo-colored result image matching the area segmentation (see the example on right side).

CommCare

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An application to strengthen and monitor community health programs that runs on low cost mobile phones.

FieldTrip

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FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

WEKA

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Your rating: None Average: 3 (2 votes)

Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.

The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

openMEDIS

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Your rating: None Average: 4.3 (3 votes)

OpenMEDIS is a simple, flexible, and standardized tool to collect (inventory) and process (manage) information on health technology infrastructure, e.g. medical devices in low- and middle income countries.

Mergence

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"Mergence is a high performance, open source HL7integration engine and application platform. It was developed to fill the need for an open source, fully transactional healthcare integration system capable of handling millions of messages per day, and thousands of concurrent LLP connections. Mergence is based on Apache ServiceMix, a lightweight enterprise service bus which conforms to the JBI standard, and HAPI, an excellent opensource HL7v2 API. We plan to support HL7v3 in the next release."

The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

JCAM Engine

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Your rating: None Average: 3 (2 votes)

XML Validation Framework and Canonical XML dictionary-based exchange assembly - OASIS CAM

The OASIS CAM toolkit provides a suite of tools for XML Validation and XML Exchange design and assembly from canonical XML dictionary components.

Included in the toolkit is an XML Editor/Validation/Schema Designer along with the CAMV runtime XML validation engine.

The project implements the OASIS CAM standard & NIEM IEPD approach. The visual editor allows design of exchange structures using XML components dictionaries.

MRmap

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Your rating: None Average: 3.2 (14 votes)

MRmap is a flexible software tool that enables T1, T2, and T2* mapping from source images of multiple types of pulse sequences (IR-prepared multi-image T1 mapping, Look-Locker/ TOMROP T1 mapping, MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).

MRmap is a pure research tool and is not intended for any diagnostic or clinical use.

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