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pydicom

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pydicom is a pure python package for working with DICOM files. It was made for inspecting and modifying DICOM data in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements.

pydicom is not a DICOM server, and is not primarily about viewing images. It is designed to let you manipulate data elements in DICOM files with python code.

OMERO

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OMERO is client-server software for visualisation, management and analysis of biological microscope images.

From the microscope to publication, OMERO handles all your images in a secure central repository. You can view, organise, analyse and share your data from anywhere you have internet access. Work with your images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software.

php Easy Survey Package (phpESP)

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Your rating: None Average: 3.3 (11 votes)

phpESP is a collection of PHP scripts to let non-technical users create surveys, administer surveys, gather results, view statistics. All managed online after database initialization.

Niftilib

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Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.

RT_Image

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RT_Image is an application developed in the Department of Radiation Oncology and MIPS at Stanford University. Coded in the Interactive Data Language (IDL, ITT Visual Information Solutions), RT_Image was originally designed in 2003 to generate radiotherapy target volumes from positron emission tomography (PET) datasets. It has since evolved to embody a variety of tools for visualizing, quantitating, and segmenting three-dimensional images.

Chiapas

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Chiapas is an enterprise level HIPAA data translation package. It supports all major healthcare transactions and a variety of SQL databases and file types, and incorporates a script parser and a GUI studio for development and maintaining specifications.

Medical Exploration Toolkit (METK)

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The MedicalExplorationToolkit (METK) was designed for loading, visualizing and exploring segmented medical data sets. It is a framework of several modules in MeVisLab, a development environment for medical image processing and visualization.

  • Case Management: Load and save whole cases of segmented structures e.g. for surgery planning, educational training or intra operative visualization.
  • Basic Visualization in 2D and 3D: Visualize segmented structures in multiple manner e.g. iso surface rendering, stippling, hatching, silhouettes, volume rendering, 2d overlays.

Epigrass

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Epigrass is a open-source simulation platform created to study epidemics and their spatial (geographic) dinamics.

Epigrass was developed as a scientific project, by the founders of Metamodellers at the Oswaldo Cruz Foundation. Currently, Metamodellers is the main maintainer of the code, ensuring its continuous improvement while remaining a completely free tool.

ESP

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The Electronic medical record Support for Public health (ESP) project is an automated software application, that analyzes electronic medical record (EMR) data, to identify and report conditions of interest to public health and other agencies.

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