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The R Project for Statistical Computing

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Your rating: None Average: 2.7 (3 votes)

R is a language and environment for statistical computing and graphics. It is a GNU project which is similar to the S language and environment which was developed at Bell Laboratories (formerly AT&T, now Lucent Technologies) by John Chambers and colleagues. R can be considered as a different implementation of S. There are some important differences, but much code written for S runs unaltered under R."

Utilities For Patient Data Exchange (UPDE)

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Utilities for Patient Data Exchange. A parser for text files to use with some of the utilities provided by the DCMTK from Offis. The purpose is to provide a basic DICOM Modality Worklist Management SCP.

Real-time Outbreak and Disease Surveillance (RODS)

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"Real-time Outbreak and Disease Surveillance (RODS) is open-source public health surveillance software. RODS collects and analyzes disease surveillance data in real time and has been in development since 1999 by the RODS Laboratory. In 2002, the Utah Department of Health used the software for monitoring during the Winter Olympics Games. At present, health departments and other groups in the United States, Canada and Taiwan use the software."

openMEDIS

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Your rating: None Average: 4.2 (6 votes)

OpenMEDIS is a simple, flexible, and standardized tool to collect (inventory) and process (manage) information on health technology infrastructure, e.g. medical devices in low- and middle income countries.

The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

ImmunoRatio

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Your rating: None Average: 3.3 (12 votes)

ImmunoRatio is a free web application for automated image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67 immunostained tissue sections.

The application:

  1. segments diaminobenzidine-stained (DAB) and hematoxylin-stained nuclei regions from the user-submitted image,
  2. calculates the percentage of DAB-stained nuclear area over total nuclear area (=labeling index), and
  3. generates a pseudo-colored result image matching the area segmentation (see the example on right side).

CommCare

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Your rating: None Average: 2.5 (2 votes)

An application to strengthen and monitor community health programs that runs on low cost mobile phones.

FieldTrip

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Your rating: None Average: 1 (8 votes)

FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

WEKA

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Your rating: None Average: 2.7 (3 votes)

Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.

The 'epitools' R Package

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Your rating: None Average: 4.8 (4 votes)

"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

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