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DVTk – DICOM Validation Toolkit

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DVTk is an open source project for testing, validating and diagnosing communication protocols and scenario's in medical environments. It supports DICOM, HL7 and IHE integration profiles. The applications from the DVTk Project are must haves for software developers, test engineers and service engineers that work in the healthcare domain. The DVTk project can save you time in your daily work and bring products and services to a higher quality level.

QuickViewHL7

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Your rating: None Average: 4.3 (4 votes)

HL7 file viewer, in tree-view format, with associated segment/field documentation. The latest release now includes editing, at all levels in the tree-view, e.g segment, field or component values. Purpose is for testing and bug-tracing HL7 communications.

InVesalius

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InVesalius is a free medical software used to reconstruct structures of the human body. Based on two-dimensional images, acquired using Computed tomography or Magnetic resonance imaging equipments, the software generates virtual three-dimensional models correspondent to anatomical parts of the human body. After reconstructing three-dimensionally DICOM images, the software allows the generation of STL (stereolithography) files. These files can be used for Rapid Prototyping.

The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

JULIDE

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JULIDE is a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections.

Grassroots DICOM (GDCM)

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Your rating: None Average: 3.9 (8 votes)

Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly. GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.

Eureka

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"An application useful to manage work shifts. Windows standalone executable for operators and web interface for workers. Multi-area, multi-schema, multi-language architecture. Layer for RDBMS technology independence, DB and LDAP authentication supported."

Insight Segmentation and Registration Toolkit (ITK)

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ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both.

The 'epicalc' R Package

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Functions making R easy for epidemiological calculation.

Datasets from Dbase (.dbf), Stata (.dta), SPSS(.sav), EpiInfo(.rec) and Comma separated value (.csv) formats as well as R data frames can be processed to do make several epidemiological calculations.

FieldTrip

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FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

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