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STIR

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STIR is Open Source software for use in tomographic imaging. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations in tomographic imaging. Currently, the emphasis is on (iterative) image reconstruction in PET, but other application areas and imaging modalities can and might be added.

STIR is the successor of the PARAPET software library which was the result of a (European Union funded) collaboration between 6 different partners (see Credits).

FieldTrip

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FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

Ginkgo CADx

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Ginkgo CADx project started in 2009 with the aim to create an interactive, universal, homogeneous, open-source and cross-platform CADX environment.

Ginkgo is built over a huge amount of advanced technologies providing full abstraction of complex tasks as:

Brainstorm

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Brainstorm is a collaborative open-source Matlab application dedicated to magnetoencephalography (MEG) and electroencephalography(EEG) data visualization, processing and cortical source estimation.
The intention is to make a comprehensive set of tools available to the scientific community involved in MEG/EEG experimental research.
For physicians and researchers, the interest of this software package resides in its rich and intuitive graphic interface, which does not require any programming knowledge.

FrameWork for Software Production Line (FW4SPL)

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FW4SPL is a component-oriented architecture with the notion of role-based programming. FW4SPL consists of a set of cross-platform C++ libraries. For now, FW4SPL focuses on the problem of medical images processing and visualization.

SIVIC

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Spectroscopic Image Visualization and Computing (SIVIC) is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.

Visualization Toolkit (VTK)

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The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing, and visualization. It consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including scalar, vector, tensor, texture, and volumetric methods, as well as advanced modeling techniques such as implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

3D Slicer

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3D Slicer is an open source software platform for medical image informatics, image processing, and three-dimensional visualization. Built over two decades through support from the National Institutes of Health and a worldwide developer community, Slicer brings free, powerful cross-platform processing tools to physicians, researchers, and the general public.