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The 'epitools' R Package

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Your rating: None Average: 4.8 (4 votes)

"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

BioSig

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BioSig is an open source software library for biomedical signal processing, featuring for example the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Major application areas are: Neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems and sleep research. The aim of the BioSig project is to foster research in biomedical signal processing by providing open source software tools for many different applications.

Medical Exploration Toolkit (METK)

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Your rating: None Average: 1.8 (4 votes)

The MedicalExplorationToolkit (METK) was designed for loading, visualizing and exploring segmented medical data sets. It is a framework of several modules in MeVisLab, a development environment for medical image processing and visualization.

  • Case Management: Load and save whole cases of segmented structures e.g. for surgery planning, educational training or intra operative visualization.
  • Basic Visualization in 2D and 3D: Visualize segmented structures in multiple manner e.g. iso surface rendering, stippling, hatching, silhouettes, volume rendering, 2d overlays.

Nukak3D

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Your rating: None Average: 1.4 (7 votes)

3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting, DICOM support.

The 'surveillance' R Package

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The R-package ’surveillance’ is a framework for the development and the evaluation of outbreak detection algorithms in univariate and multivariate routine collected public health surveillance data. Hence, potential users are biostatisticians, epidemiologists and others working in applied infectious disease epidemiology. However, applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.

Simulation Open Framework Architecture (SOFA)

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Your rating: None Average: 4.2 (6 votes)

SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool.

GNU Octave

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Your rating: None Average: 4.5 (2 votes)

GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with Matlab. It may also be used as a batch-oriented language.

FieldTrip

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FieldTrip is a Matlab software toolbox for MEG and EEG analysis that is being developed at the Centre for Cognitive Neuroimaging of the Donders Institute for Brain, Cognition and Behaviour together with collaborating institutes. The development of FieldTrip is currently by funding from the BrainGain and the Human Connectome projects.

Dicom3tools

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Your rating: None Average: 4.2 (5 votes)

"Command line utilities for creating, modifying, dumping and validating files of DICOM attributes, and conversion of proprietary image formats to DICOM. Can handle older ACR/NEMA format data, and some proprietary versions of that such as SPI."

ODIN

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"ODIN is a C++ software framework to develop, simulate and run magnetic resonance sequences on different platforms."

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