DVTk is an open source project for testing, validating and diagnosing communication protocols and scenario's in medical environments. It supports DICOM, HL7 and IHE integration profiles. The applications from the DVTk Project are must haves for software developers, test engineers and service engineers that work in the healthcare domain. The DVTk project can save you time in your daily work and bring products and services to a higher quality level.
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"ODIN is a C++ software framework to develop, simulate and run magnetic resonance sequences on different platforms."
OpenEMed is a set of distributed healthcare information service components built around the OMG distributed object specifications and the HL7 (and other) data standards and is written in Java for platform portability. We emphasize the interoperable service functionality that this approach provides in reducing the time it takes to build a healthcare related system. It is not intended as a turnkey system but rather a set of components that can be assembled and configured to meet a variety of tasks.
The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.
- Automatic visualiztion with Cytoscape.
- Automatic generation of rule based models for BioNetGen.
- Storage of biological facts that can be used for modelling.
Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly. GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.
The project stands for Medical Image Conversion. Released under the (L)GPL licence, it comes with the full C-source code of the library, a flexible command-line utility and a neat graphical front-end using the Gtk+ toolkit. The supported formats are: Acr/Nema 2.0, Analyze (SPM), Concorde/µPET, DICOM 3.0, CTI ECAT 6/7, NIfTI-1, InterFile3.3 and PNG or Gif87a/89a.
C# ECG Toolkit is an open source software toolkit to convert, view and print electrocardiograms. The toolkit is developed using C# .NET 1.1 & 2.0. Support for ECG formats: SCP-ECG, DICOM and HL7 aECG.
Brainstorm is a collaborative open-source Matlab application dedicated to magnetoencephalography (MEG) and electroencephalography(EEG) data visualization, processing and cortical source estimation.
The intention is to make a comprehensive set of tools available to the scientific community involved in MEG/EEG experimental research.
For physicians and researchers, the interest of this software package resides in its rich and intuitive graphic interface, which does not require any programming knowledge.
The Image-Guided Surgery Toolkit is a high-level, component-based framework which provides a common functionality for image-guided surgery applications. The framework is a set of high-level components integrated with low-level open source software libraries and application programming interfaces (API) from hardware vendors.
Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.
Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.