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rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

IHE open source

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Your rating: None Average: 2.5 (8 votes)

This project holds an implementation of the Cross-Enterprise Document Sharing (XDS) profile as defined by IHE (ihe.net). It includes implementations of both the Document Registry and Document Repository actors.

The project is deployed at the XDS Public Registry Test Facility of the National Institute of Standards and Technology (NIST).

GIMIAS

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Your rating: None Average: 2.4 (8 votes)

GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.

GIMIAS suites are collections of prototypes that build a complete platform for one or more clinical applications.

HIEOS

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Your rating: None Average: 2 (2 votes)

HIEOS is an open source implementation of Integrating the Healthcare Enterprise (IHE) Cross Enterprise Document Sharing (XDS.b) and Cross Community Access (XCA) integration profiles.

ParaView

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Your rating: None Average: 4 (1 vote)

ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaView's batch processing capabilities.

ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.

ViMeT

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Your rating: None Average: 3 (7 votes)

Virtual Medical Training (ViMeT) is an object-oriented framework that uses virtual reality to simulate medical training.

CyberUnits

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Your rating: None Average: 5 (13 votes)

CyberUnits is a cross-platform class library for rapid programming of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal, S and Matlab.