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The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

Gwyddion

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Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.

It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.

rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

The 'surveillance' R Package

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The R-package ’surveillance’ is a framework for the development and the evaluation of outbreak detection algorithms in univariate and multivariate routine collected public health surveillance data. Hence, potential users are biostatisticians, epidemiologists and others working in applied infectious disease epidemiology. However, applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.

The 'medAdherence' R Package

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Adherence is defined as "the extent to which a person’s behavior coincides with medical or health
advice", which is very important, for both clinical researchers and physicians, to identify the treatment
effect of a specific medication(s).

ADDIS

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ADDIS is a software developed within the Dutch Escher-project for managing and analyzing clinical trial information.

ADDIS is a proof-of-concept system that allows us to simultaneously discover the possibilities of and the requirements on a database of structured clinical trials data. The automated discovery and (meta-)analysis of trial data, as well as benefit-risk assessment is supported.

ADDIS comes with two built-in examples:

QuickViewHL7

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HL7 file viewer, in tree-view format, with associated segment/field documentation. The latest release now includes editing, at all levels in the tree-view, e.g segment, field or component values. Purpose is for testing and bug-tracing HL7 communications.

Laika

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Laika analyzes and reports on the interoperability capabilities of EHR systems. This includes the testing for certification of EHR software products and networks.

To support EHR data interoperability testing, Laika is designed to verify the input and output of EHR data against the standards and criteria identified by the Certification Commission for Health Information Technology (CCHIT). Laika is used by the Certification Commission to perform part of the interoperability certification inspection of EHRs.

RANDI2

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RANDI2 is an open source web application for randomization within clinical trials. It supports a variety of randomization algorithms and offers a very useful set of functions for randomization data & progress visualization and trial management - for more information please visit http://www.randi2.org

GNU Octave

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GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with Matlab. It may also be used as a batch-oriented language.

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