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CASE

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The main goal of the Computer Assisted Search for Epidemics (CASE) project is to develop a reliable system that generates warnings when the number of reported cases of a particular infectious disease reaches a level that indicates an unusual or unexpected rate. The system is currently in use at the Swedish Institute for Infectious Disease Control (SMI). It performs daily surveillance using data obtained from the database to which all notifiable diseases are reported in Sweden.

Homepage: 
https://smisvn.smi.se/case/

EGADSS

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EGADSS (Evidence-based Guideline and Decision Support System) is an open source tool that is designed to work in conjunction with primary care Electronic Medical Record (EMR) systems to provide patient specific point of care reminders in order to aid physicians provide high quality care. EGADSS is designed as a stand alone system that would respond to requests from existing Electronic Medical Records such as Wolf, Med Access, and MedOffIS to provide patient specific clinical guidance based on its internal collection of guidelines.

Homepage: 
http://egadss.sourceforge.net/

The 'epitools' R Package

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"epitools (epidemiology tools) is an R package for epidemiologic computing and graphics."

Homepage: 
http://www.medepi.com/?q=epitools

OBsched

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Occupancy in certain hospital patient care units is impacted by procedure scheduling policies and practices. For example, intensive care unit occupancy is strongly related to open heart surgery schedules. Similarly, occupancy in obstetrical postpartum units is impacted by the daily number of scheduled labor inductions and cesarean sections. That was the motivation for this project.

OBsched is a set of optimization models and supporting software for exploring the relationship between patient scheduling and nursing unit occupancy in hospitals.

Homepage: 
http://www.hselab.org/projects/obsched/

The 'surveillance' R Package

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The R-package ’surveillance’ is a framework for the development and the evaluation of outbreak detection algorithms in univariate and multivariate routine collected public health surveillance data. Hence, potential users are biostatisticians, epidemiologists and others working in applied infectious disease epidemiology. However, applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.

Homepage: 
http://surveillance.r-forge.r-project.org/

PyMVPA

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"PyMVPA is a Python module intended to ease pattern classification analyses of large datasets. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. PyMVPA provides high-level abstraction of typical processing steps and a number of implementations of some popular algorithms. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is truly free software (in every respect) and additionally requires nothing but free-software to run."

Homepage: 
http://www.pymvpa.org/

PyEEG

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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

Homepage: 
http://code.google.com/p/pyeeg/

WEKA

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Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.

Homepage: 
http://www.cs.waikato.ac.nz/ml/weka/

Medical Imaging Interaction Toolkit (MITK)

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The Medical Imaging Interaction Toolkit (MITK) is a free open-source software system for development of interactive medical image processing software. MITK combines the Insight Toolkit (ITK) and the Visualization Toolkit (VTK) with an application framework. As a toolkit, MITK offers those features that are relevant for the development of interactive medical imaging software covered neither by ITK nor VTK.

Core features of the MITK platform:

Homepage: 
http://www.mitk.org

Brainstorm

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Brainstorm is a collaborative open-source Matlab application dedicated to magnetoencephalography (MEG) and electroencephalography(EEG) data visualization, processing and cortical source estimation.
The intention is to make a comprehensive set of tools available to the scientific community involved in MEG/EEG experimental research.
For physicians and researchers, the interest of this software package resides in its rich and intuitive graphic interface, which does not require any programming knowledge.

Homepage: 
http://neuroimage.usc.edu/brainstorm

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